Greetings,
I'm trying to run a base1 plugin using the Base1PluginExecuter in
base-2.3.1.
In the 'Job Parameters' section of the configuration for this plugin, I have
this[1]. The basefile that is generated should have a 'parameter' section. I
would expect it to look like this[2]. Instead it looks like this[3].
Apparently, the 'position' is being ignored. In this case the position of
the 'section\tparameter' is critical: it *must* be first.
The order of items in the 'parameter' section does not change if I move the
order of 'parameter' elements in the xml.
Can you help?
Chad Matsalla
National Research Council of Canada
Plant Biotechnology Institute
[1]
<jobparameters>
<parameter position="1" type="h">
<name>section</name>
<commonname></commonname>
<options>6</options>
<defaultvalue>parameter</defaultvalue>
</parameter>
<parameter position="2" type="e">
<name>windowcol</name>
<commonname>Intensity to use</commonname>
<options>0</options>
<defaultvalue>median</defaultvalue>
<enumoptions>
<value key="median">Median</value>
<value key="mean">Mean</value>
</enumoptions>
</parameter>
<!-- a total of ten parameters are in this file. I only included two, for
brevity -->
</jobparameters>
[2]
BASEfile
endwindow 32768
backgroundcol none
section parameter
startwindow 16384
saturated 0
report yes
scale log2
replacefrom 32768
originals leave
pluginDirectory /home/root/projects for people/maureen/wt vs. tga1
(shearer)/Transformation PMT Merging
windowcol median
%
[3]
BASEfile
section parameter
endwindow 32768
backgroundcol none
startwindow 16384
saturated 0
report yes
scale log2
replacefrom 32768
originals leave
pluginDirectory /home/root/projects for people/maureen/wt vs. tga1
(shearer)/Transformation PMT Merging
windowcol median
%
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