Hi Chad, This is correct. According to the specification (http://base1.thep.lu.se/documentation/development/plugins.txt) the order of the headers has no requirement. I suggest that you write your plug-in so it is independent of the order of the headers.
/Johan Chad Matsalla wrote: > Greetings, > > I'm trying to run a base1 plugin using the Base1PluginExecuter in > base-2.3.1. > > > In the 'Job Parameters' section of the configuration for this plugin, I have > this[1]. The basefile that is generated should have a 'parameter' section. I > would expect it to look like this[2]. Instead it looks like this[3]. > > Apparently, the 'position' is being ignored. In this case the position of > the 'section\tparameter' is critical: it *must* be first. > > The order of items in the 'parameter' section does not change if I move the > order of 'parameter' elements in the xml. > > > Can you help? > > Chad Matsalla > National Research Council of Canada > Plant Biotechnology Institute > > > > > [1] > <jobparameters> > <parameter position="1" type="h"> > <name>section</name> > <commonname></commonname> > <options>6</options> > <defaultvalue>parameter</defaultvalue> > </parameter> > <parameter position="2" type="e"> > <name>windowcol</name> > <commonname>Intensity to use</commonname> > <options>0</options> > <defaultvalue>median</defaultvalue> > <enumoptions> > <value key="median">Median</value> > <value key="mean">Mean</value> > </enumoptions> > </parameter> > <!-- a total of ten parameters are in this file. I only included two, for > brevity --> > </jobparameters> > > [2] > BASEfile > endwindow 32768 > backgroundcol none > section parameter > startwindow 16384 > saturated 0 > report yes > scale log2 > replacefrom 32768 > originals leave > pluginDirectory /home/root/projects for people/maureen/wt vs. tga1 > (shearer)/Transformation PMT Merging > windowcol median > % > > [3] > BASEfile > section parameter > endwindow 32768 > backgroundcol none > startwindow 16384 > saturated 0 > report yes > scale log2 > replacefrom 32768 > originals leave > pluginDirectory /home/root/projects for people/maureen/wt vs. tga1 > (shearer)/Transformation PMT Merging > windowcol median > % > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > [EMAIL PROTECTED] > ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
