Nicklas Nordborg wrote: > Steve Taylor wrote: > >>Hi, >> >>We have just updated to BASE 2.4.1 and I have tried importing an >>Illumina format file but I get the message: >> >>No file format that matches the file >> >>I tried Import via Experiment and used Import via Raw bioassays. > > > The Illumina import works from the Raw bioassay list view or from the > view page for a single experiment. It will look for a line starting with > the string 'TargetID' which is the header line just before the data > starts. The importer also checks that the first line in the file > contains the word 'Illumina'. See http://base.thep.lu.se/ticket/486 > for examples of files that we have used for testing (the *.csv files). > > >>In BASE 2.2.1 I set up BASE so it could import modified Illumina data >>using Jeremy Davis-Turak modifications to raw-data-types.xml. >>However, I am using the raw-data-types.xml supplied with BASE 2.4.1. >> and have deleted existing projects using these. Would anything else >>be causing some sort of conflict? Or do I need to do some further >>configuration? > > > The Illumina import doesn't support different configurations.
Thanks. The configuration looks good, unfortunately the plugin just hangs when I run it. It is just stuck on the 'Waiting' status. I have also tested a few other plugins and they do the same. There doesn't seem to be any error messages in the logs. Any ideas about how I could find out what the problem is? Thanks, Steve ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]