Nicklas Nordborg wrote:
> Steve Taylor wrote:
> 
>>Hi,
>>
>>We have just updated to BASE 2.4.1 and I have tried importing an
>>Illumina format file but I get the message:
>>
>>No file format that matches the file
>>
>>I tried Import via Experiment and used Import via Raw bioassays.
> 
> 
> The Illumina import works from the Raw bioassay list view or from the 
> view page for a single experiment. It will look for a line starting with 
> the string 'TargetID' which is the header line just before the data 
> starts. The importer also checks that the first line in the file 
> contains the word 'Illumina'. See http://base.thep.lu.se/ticket/486
> for examples of files that we have used for testing (the *.csv files).
> 
> 
>>In BASE 2.2.1 I set up BASE so it could import modified Illumina data
>>using Jeremy Davis-Turak modifications to raw-data-types.xml.
>>However, I am using the raw-data-types.xml supplied with BASE 2.4.1.
>> and have deleted existing projects using these. Would anything else
>>be causing some sort of conflict? Or do I need to do some further
>>configuration?
> 
> 
> The Illumina import doesn't support different configurations.

Thanks. The configuration looks good, unfortunately the plugin just hangs when 
I run it. It is just stuck on the 'Waiting' status. I have also tested a few 
other plugins and they do the same. There 
doesn't seem to be any error messages in the logs.

Any ideas about how I could find out what the problem is?

Thanks,

Steve

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