I see exactly the same as Dominic. Also, in the Experiment Explorer, as in BASE1, the bioassays are coloured according to just one of the sample's annotations, even if I make sure that the rawbioassay inherits from both. It doesn't always seem to be the "channel 1" sample either, but I could be wrong there.
Where the "channel 2" sample is always some kind of reference which is constant throughout the experiment, its annotations are not so important, but for all other experiments, having both annotations is essential (as Micha points out). > BASE actually chooses one of them, at least as shown on the GUI here. > It's not the exprimental factors section of the GUI parse that's > relevant here, based on my understanding, but the Raw Bio assays section > listing each raw bio assay included in the experiment. Since > experimental factor values/annotation values has to be propagated > through the Raw Bio assays. > > For each Raw Bio assay in an experiment, you can only see or get one of > the inherited values having inherited annotations from two different > Sample items each from a line in the two channel hyb. > > However, the inherited values are displayed as separate annotations for > the raw bio assays on the 'Inherited annotations and protocol parameters > section' of the view page. > > If this is not the case then I must have a wrong understanding of how > factor values annotation are obtained or handled in BASE. > > ¬Dominic > > > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Splunk Inc. > Still grepping through log files to find problems? Stop. > Now Search log events and configuration files using AJAX and a browser. > Download your FREE copy of Splunk now >> http://get.splunk.com/ > _______________________________________________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > [EMAIL PROTECTED] -- Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups | Division of Cell and Molecular Biology | Imperial College London | Phone +442075941945 | Email [EMAIL PROTECTED] ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
