I am using the latest Base, and trying to load an initial data set. My
initial effort was to modify the reporter importer to load some affy probes
from a csv file. This worked fine for a small list, but as the list
approached >500 individuals, I started receiving out of memory errors from
the Java Heap...and even brought Tomcat to its knees on a couple of
occassions. As a workaround, I uploaded the an 80ish MB CDF file from Affy,
which contains the array design. This went in fine. Then I tried to use
the feature that allows me to import reporters from the CDF file--again Java
OOM errors, and tomcat whining.
We have given Tomcat 2GB to play with, and this seems like it should be more
than enough. Are there known issues with this utility that I should be
aware of, or is there a rule-of-thumb to follow when allocating memory to
tomcat, based on the size of files that need to be parsed? Or maybe another
memory setting somewhere that I must have overlooked?
I will be happy to post more specific error messages if that will help the
troubleshooting process.
Thanks in advance for any suggestions.
Kind Regards,
matthew
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