Hi Berenice
This comes from your BASEfile. The assay header in the spots section
should be tab separated. It looks like you are using a space instead.
/Johan
On 9 jan 2008, at 17.48, Bérénice WULBRECHT wrote:
Hi,
I installed BASE 2.5 and migrate data from my BASE 1. I have bug
when I run Base1PluginExecuter during the data import.
This is the stack trace :
java.lang.NumberFormatException: For input string: " 8"
at
java
.lang
.NumberFormatException.forInputString(NumberFormatException.java:48)
at java.lang.Integer.parseInt(Integer.java:447)
at java.lang.Integer.parseInt(Integer.java:497)
at
net
.sf
.basedb
.plugins.Base1PluginExecuter.importData(Base1PluginExecuter.java:1393)
at
net
.sf.basedb.plugins.Base1PluginExecuter.run(Base1PluginExecuter.java:
698)
at
net
.sf
.basedb
.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:89)
at net.sf.basedb.core.InternalJobQueue
$JobRunner.run(InternalJobQueue.java:435)
at java.lang.Thread.run(Thread.java:595)
It's a problem with bioassayId during the conversion of the string in
an integer.
Have you ever had this problem?
Thank you.
Berenice Wulbrecht
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