Hi Nick,
It is correct that reporterlists isn't imported by the
Base1PluginExecuter. I have added a ticket, http://base.thep.lu.se/ticket/943
.
There is no workaround.
/Johan
On 7 mar 2008, at 15.41, Nick Loman wrote:
> Bob MacCallum wrote:
>
>> The tricks are (in no particular order)
>>
>> * share the plugin definition and configuration to everyone
>>
>> * configure the plugin using the the config files in
>> Root's "/BASE 1 plugin configuration files" folder.
>
> Hi
>
> Thanks for replies Bob/Nicklas.
>
> I had to make the following changes to the MGH stuff so far and have
> got
> a little further.
>
> BASE was getting upset because the first entry in the definition
> was missing the 'maxChannels' parameter. Therefore, I deleted all
> the BASEfile definitions apart from the last one which has a value
> for 'maxChannels' and managed to configure the plugin successfully.
>
> I had to make the following change to basefile-genelist.pl and
> basefile-general.pl to get it to read the BASEfile correctly.
>
> 89c86
> < elsif($currentsection eq "BASEfile") {
> ---
>> elsif($currentsection eq "BASEfile" or $currentsection eq
> 'settings') {
> 93d89
>
> Now although the PNG files are created correctly and copied to the
> folder, the actual reporterlist information is not being imported
> into BASE.
>
> The stdout output from the script is as follows:
>
> BASEfile
> section<tab>reporterlist
> columns<tab>reporterId<tab>score
> ECs4755 0.256762034483983
> ECs3012 0.119996549971508
> ECs2479 0.286847065875626
> ...
>
> Now, looking at the BASE 2.5.0 sourcecode, there is no case in
> "importData()" which handles a reporterlist section. So perhaps I
> should
> not be surprised no data is being imported?
>
> Can anyone confirm whether this is the case, and whether there is any
> workaround?
>
> Many thanks
>
> Nick.
>
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