Hi, I'm trying to import some ChipSkipper data into BASE2.6. While configuring the raw data importer I see that the files all have different column headings, incorporating the hybridisation name e.g. for GS_Flags column:
H_CLQ50 11_control 9/GS_Flags H_CLQ50 4_Control 2/GS_Flags H_PbICLQ50 7_PbI 5/GS_Flags H_PbICLQ50 14_PbI 12/GS_Flags It looks like I might have two options: 1. preprocess the raw data files with a Perl script to remove the hyb info from the column headings 2. configure the importer to use column numbers rather than names, e.g. \12\ but I don't know if this works in BASE2. Has anyone else run into this type of problem? cheers, Bob. -- Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups | Division of Cell and Molecular Biology | Imperial College London | Phone +442075941945 | Email [EMAIL PROTECTED] ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
