Bob MacCallum wrote: > Hi, > > I'm trying to import some ChipSkipper data into BASE2.6. While configuring > the raw data importer I see that the files all have different column headings, > incorporating the hybridisation name e.g. for GS_Flags column: > > H_CLQ50 11_control 9/GS_Flags > H_CLQ50 4_Control 2/GS_Flags > H_PbICLQ50 7_PbI 5/GS_Flags > H_PbICLQ50 14_PbI 12/GS_Flags > > It looks like I might have two options: > > 1. preprocess the raw data files with a Perl script to remove the hyb info > from the column headings > > 2. configure the importer to use column numbers rather than names, e.g. \12\ > but I don't know if this works in BASE2.
Yes, it should work. There is also a third option. You can use regular expressions in the column mappings. I think it should be possible to map a column something like this: \.*GS_Flags\ /Nicklas ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
