Moore, Jonathan wrote: > I have been working through the documentation, but I can't figure out > how to load our normalised data. > > We have loaded the .CDF and .CEL files for our Affy chip and > experiments, and we now have a fully-populated Experiment Overview. We > are normalising outside BASE using various bespoke methods, and would > like to load the normalised values per probe-set (reporter) per bioassay. > > Is there a way to do this?
Not that I know of. The only plug-ins that have been developed for Affymetrix so far are some normalization plug-ins that are available from http://baseplugins.thep.lu.se/wiki/PluginDownload. > > We are also interested in importing MAGE data from Array Express - is > this possible? Someone would have to create a plug-in for it. As far as I know none exists yet. There was work on a Tab2Mage importer some time ago but I don't think it works very well with the latest version of BASE. /Nicklas ------------------------------------------------------------------------------ This SF.net email is sponsored by: SourcForge Community SourceForge wants to tell your story. http://p.sf.net/sfu/sf-spreadtheword _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to basedb-users-requ...@lists.sourceforge.net
