Hi, 1) I am getting an exception upon uploading a file to BASE, using the menu 'Files and directories -> Upload file...'. The exception is: BaseException ...at File.getNewFile(File.java:1573) ...at File.getUploadStream(File.java:1374) ...at net.sf.basedb.clients.web.servlet.Upload.doPost(Upload.java:207) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:637) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) ...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) ...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) ...at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) ...at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) ...at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) ...at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) ...at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) ...at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293) ...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:859) ...at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:602) ...at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489) ...at java.lang.Thread.run(Thread.java:679)
Caused by: java.io.FileNotFoundException: /usr/local/base2/files/2014-44/30-15 ...at File.getNewFile(File.java:1555) ...at File.getUploadStream(File.java:1374) ...at net.sf.basedb.clients.web.servlet.Upload.doPost(Upload.java:207) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:637) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) ...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) ...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) ...at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) ...at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) ...at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) ...at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) ...at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) ...at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293) ...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:859) ...at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:602) ...at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489) ...at java.lang.Thread.run(Thread.java:679) 2) On a side note: I noticed that the pop-up menu for 'file upload' assumes that my BASE client browser is on the same file system as where BASE is installed, and that I have an account on that server (e.g. /home/rbadrawi), which is not the case. I am not sure how to change the default directory displayed in the pop-up file upload menu to reflect my current directory on my local machine. However, even after creating a matching directory on the server (i.e. '/home/rbadrawi' in my case) the exception is not resolved. I would appreciate any feedback on the topic. Rachad Badrawi Data Integration Manager, Ontario Cancer Biomarker Network (OCBN). relbadr...@ocbn.ca Adjunct Lecturer, Department of Pathology and Molecular Medicine, Queen's University. rachad.badr...@queensu.ca
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