I haven't tested the procedure myself, but a paper in 2006 in BMC
Bioinformatics described a "machine learning approach." See Yan et al. 7:262.
Good luck!
-----Original Message-----
From: [EMAIL PROTECTED] on behalf of Donnie Darko
Sent: Sun 1/6/2008 9:57 AM
To: [email protected]
Cc:
Subject: [BiO BB] Newbie question.[Scanned]
Hi folks,
Suppose I have a novel gene whose product is a DNA binding protein, how
would I go about locating potential binding sites where this protein
could
bind? I'm only interested in finding sites for this specific protein
and not
a general scan of tfbs.
I've extracted upstream sequences of genes that I'm interested in but I
can't think of a way forward.
Cheers and belated happy new year :-P
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