Dear Jinyan, We have a software tool called "ProteoLens" (http://bio.informatics.iupui.edu/proteolens/) that is quite robust, especially if you are familiar with SQL and would like to use Oracle , postgreSQL, or GML to manage your network data.
For a simple network with prettier layout and click-style navigator, try Cytoscape. Best, Jake Chen, Ph.D. Assistant Professor, (IU) Informatics & (Purdue) Computer Science Director, Indiana Center for Systems Biology and Personalized Medicine Indiana University - Purdue University Indianapolis 719 Indiana Avenue, WK #190 Indianapolis, IN 46202 Office: (317) 278-7604 Lab: (317) 274-7542 [EMAIL PROTECTED] | http://bio.informatics.iupui.edu/ -----Original Message----- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Jinyan Huang Sent: Tuesday, April 01, 2008 10:05 PM To: [email protected] Subject: [BiO BB] How to make a network graphic using my genes in pathways? I have 20 pathways. My interesting genes are in these pathways. There are some genes overlaps in these pathways. How can I make a graphic network using these genes? It means connecting these pathways through these overlap genes. What kind of software can I use? Thank you very much in advance. -- Best regards, Jinyan Huang (ekeen) School of Life Sciences and Technology, 1302 Room Tongji University Siping Road 1239, Shanghai 200092 P.R. China Tel :0086-21-65981041 Msn: [EMAIL PROTECTED] eMail: [EMAIL PROTECTED] _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
