I recommend cytoscape: http://www.cytoscape.org/.
I haven't done it yet but it seems to be set up to run analyses as well. The pictures come out pretty good as well. Tim On Wed, Apr 2, 2008 at 4:49 PM, Gaurav Pandey <[EMAIL PROTECTED]> wrote: > You can try GraphViz (http://www.graphviz.org/). > > Gaurav > > > > On Tue, Apr 1, 2008 at 9:04 PM, Jinyan Huang <[EMAIL PROTECTED]> wrote: > > > I have 20 pathways. My interesting genes are in these pathways. There > > are some genes overlaps in these pathways. How can I make a graphic > > network using these genes? It means connecting these pathways through > > these overlap genes. What kind of software can I use? > > > > Thank you very much in advance. > > > > > > -- > > Best regards, > > Jinyan Huang (ekeen) > > School of Life Sciences and Technology, 1302 Room > > Tongji University > > Siping Road 1239, Shanghai 200092 > > P.R. China > > Tel :0086-21-65981041 > > Msn: [EMAIL PROTECTED] > > eMail: [EMAIL PROTECTED] > > > > _______________________________________________ > > BBB mailing list > > [email protected] > > http://www.bioinformatics.org/mailman/listinfo/bbb > > > > > > -- > Gaurav Pandey Email: [EMAIL PROTECTED] > Computer Science Department Webpage: www.cs.umn.edu/~gaurav > University of Minnesota Tel: 612-701-2494 > > > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
