Yes, I can find binding sites Oct4, Sox2 and c-Myc. But factors of lin28, Klf4 and nanog cannot be found in this database.
On Sat, May 31, 2008 at 12:08 PM, Alexander Kel <[EMAIL PROTECTED]> wrote: > Hi all, > > To use the free public TRANSFAC > please, click at: > http://www.gene-regulation.com/pub/databases.html > > on the third item in the list: > "Search TRANSFAC Public" > http://www.gene-regulation.com/cgi-bin/pub/databases/transfac/search.cgi > > Sorry, for the confusion. Our sales and marketing made a good > effort to put the Transfac professional at the top of the list :) > But still the public version is available. > > Alexander > > > > > On Thu, May 29, 2008 at 3:23 AM, Jinyan Huang <[EMAIL PROTECTED]> wrote: >> Thank you very much for your suggestion. >> >> It is easy to registrate on gene-regulation.com. But when I browse the >> TRANSFAC database, it links to http://www.biobase-international.com/. >> For a free trial, it must finish a registration form. It is hard to >> pass this registration form. It is like this >> http://www.biobase-international.com/pages/index.php?id=456. >> >> >> In JARSPAR I can not find the factors which I interested >> >> no profiles in JASPAR satisfies search criteria >> >> >> >> 2008/5/29 lichunjiang <[EMAIL PROTECTED]>: >>> >>> >>> Really? I registrated for gene-regulation.com a couple of years ago, it is >>> quite easy.�It does not make sense that you can not register. Or you >>> should just write to the service to fix the problem. >>> >>> Actually, >>> it is free to use a reduced version. For the full professional version, >>> you need to pay. >>> >>> Besides Transfac, I recommend another >>> database: JARSPAR available at http://jaspar.genereg.net/.�It is >>> totally free to use. >>> Hope this help. >>> Good luck! >>> >>> >>> >>>> It seems it is hard to pass the registration. >>>> >>>> 2008/5/28 J Greenbaum <[EMAIL PROTECTED]>: >>>>> The >>> Transfac database (www.gene-regulation.com/pub/databases.html) >>>>> should have what you are looking for... >>>>> >>>>> Jason Greenbaum >>>>> Postdoctoral Fellow >>>>> >>> La Jolla Institute for Allergy & Immunology >>>>> >>>>> 2008/5/27 Jinyan Huang <[EMAIL PROTECTED]>: >>>>>> I want to get the Transcription Factor target sequences. >>> They are >>>>>> >>> Oct4 $B!$ (BSox2 $B!$ (BcMyc $B!$ (BKlf4 $B!$ (BNanog $B!$ (BLin28. >>>>>> Is there such free database? Or should I just search it one >>> by one >>>>>> from the literature? >>>>>> >>>>>> >>>>>> -- >>>>>> Best regards, >>>>>> Jinyan Huang (ekeen) >>>>>> School of Life >>> Sciences and Technology, 1302 Room >>>>>> Tongji University >>>>>> Siping Road 1239, Shanghai 200092 >>>>>> P.R. >>> China >>>>>> Tel :0086-21-65981041 >>>>>> Msn: >>> [EMAIL PROTECTED] >>>>>> eMail: [EMAIL PROTECTED] >>>>>> >>>>>> >>> _______________________________________________ >>>>>> BBB >>> mailing list >>>>>> [email protected] >>>>>> >>> http://www.bioinformatics.org/mailman/listinfo/bbb >>>>>> >>>>> >>>>> >>> _______________________________________________ >>>>> BBB mailing >>> list >>>>> [email protected] >>>>> >>> http://www.bioinformatics.org/mailman/listinfo/bbb >>>>> >>>> >>> >>>> >>>> >>>> -- >>>> Best regards, >>>> >>> Jinyan Huang (ekeen) >>>> School of Life Sciences and Technology, >>> 1302 Room >>>> Tongji University >>>> Siping Road 1239, Shanghai >>> 200092 >>>> P.R. China >>>> Tel :0086-21-65981041 >>>> Msn: >>> [EMAIL PROTECTED] >>>> eMail: [EMAIL PROTECTED] >>>> >>>> _______________________________________________ >>>> BBB >>> mailing list >>>> [email protected] >>>> >>> http://www.bioinformatics.org/mailman/listinfo/bbb >>>> >>>> >>> >>> >>> >>> -- >>> [EMAIL PROTECTED] >>> Institute of >>> Biochemistry and Cell Biology, >>> Shanghai Institutes for Biological >>> Sciences, >>> Chinese Academy of Sciences >>> >>> _______________________________________________ >>> BBB mailing list >>> [email protected] >>> http://www.bioinformatics.org/mailman/listinfo/bbb >>> >>> >> >> >> >> -- >> Best regards, >> Jinyan Huang (ekeen) >> School of Life Sciences and Technology, 1302 Room >> Tongji University >> Siping Road 1239, Shanghai 200092 >> P.R. China >> Tel :0086-21-65981041 >> Msn: [EMAIL PROTECTED] >> eMail: [EMAIL PROTECTED] >> _______________________________________________ >> BBB mailing list >> [email protected] >> http://www.bioinformatics.org/mailman/listinfo/bbb >> > > > > -- > Alexander Kel, PhD > SVP R&D > BIOBASE GmbH, > Halchtersche Strasse 33 > D-38304 Wolfenbuettel > Phone: +49 (0) 5331-8584-41 > Fax: +49 (0) 5331-8584-70 > www.biobase.de > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > -- Best regards, Jinyan Huang (ekeen) School of Life Sciences and Technology, 1302 Room Tongji University Siping Road 1239, Shanghai 200092 P.R. China Tel :0086-21-65981041 Msn: [EMAIL PROTECTED] eMail: [EMAIL PROTECTED] _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
