AFAIK, Cn3D is not able to open .pdb files. It uses a specific format. >From the Cn3D FAQ (http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3dfaq.shtml#NOPDB):
Cn3D reads only data files from the MMDB database, not PDB formatted records. MMDB is derived from the PDB database, but is corrected for naming-problems, performs domain-splitting, assigns consistent secondary structures, adds complete bonding information, and finally makes protein sequences corresponding exactly to the residues that appear in the structure. This work is done by a series of programs not possible to include in Cn3D. So... Quoting Shameer Khadar <[EMAIL PROTECTED]>: > Hi, > > I trust you can download a standalone version of Cn3D from NCBI and use it > for visualization of custom .pdb files. > http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml > > > On Thu, Nov 13, 2008 at 5:30 AM, Javier Forment Millet < > [EMAIL PROTECTED]> wrote: > > > Hi, all... Does anyone know any way to open custom .pdb files with the Cn3D > > tool? > > > > -- > > Javier Forment Millet > > Instituto de Biolog�a Celular y Molecular de Plantas (IBMCP) CSIC-UPV > > Ciudad Polit�cnica de la Innovaci�n (CPI) Edificio 8 E, Escalera 7 Puerta > > E > > Calle Ing. Fausto Elio s/n. 46022 Valencia, Spain > > Tlf.:+34-96-3877858 > > FAX: +34-96-3877859 > > [EMAIL PROTECTED] > > > > > > _______________________________________________ > > BBB mailing list > > [email protected] > > http://www.bioinformatics.org/mailman/listinfo/bbb > > > > > > -- > K. Shameer > NCBS - TIFR > > ========================================= > | Indulge | Innovate | Inspire | > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > -- Javier Forment Millet Instituto de Biolog�a Celular y Molecular de Plantas (IBMCP) CSIC-UPV Ciudad Polit�cnica de la Innovaci�n (CPI) Edificio 8 E, Escalera 7 Puerta E Calle Ing. Fausto Elio s/n. 46022 Valencia, Spain Tlf.:+34-96-3877858 FAX: +34-96-3877859 [EMAIL PROTECTED]
_______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
