http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3dtutP2.shtml#PDB_data This link says Structures in PDB can be visualised using Cn3D.
On Mon, Nov 17, 2008 at 11:54 PM, Javier Forment Millet < [EMAIL PROTECTED]> wrote: > AFAIK, Cn3D is not able to open .pdb files. It uses a specific format. > > >From the Cn3D FAQ > (http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3dfaq.shtml#NOPDB): > > Cn3D reads only data files from the MMDB database, not PDB formatted > records. > MMDB is derived from the PDB database, but is corrected for > naming-problems, > performs domain-splitting, assigns consistent secondary structures, adds > complete bonding information, and finally makes protein sequences > corresponding > exactly to the residues that appear in the structure. This work is done by > a > series of programs not possible to include in Cn3D. > > So... > > > > > Quoting Shameer Khadar <[EMAIL PROTECTED]>: > > > Hi, > > > > I trust you can download a standalone version of Cn3D from NCBI and use > it > > for visualization of custom .pdb files. > > http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml > > > > > > On Thu, Nov 13, 2008 at 5:30 AM, Javier Forment Millet < > > [EMAIL PROTECTED]> wrote: > > > > > Hi, all... Does anyone know any way to open custom .pdb files with the > Cn3D > > > tool? > > > > > > -- > > > Javier Forment Millet > > > Instituto de Biología Celular y Molecular de Plantas (IBMCP) CSIC-UPV > > > Ciudad Politécnica de la Innovación (CPI) Edificio 8 E, Escalera 7 > Puerta > > > E > > > Calle Ing. Fausto Elio s/n. 46022 Valencia, Spain > > > Tlf.:+34-96-3877858 > > > FAX: +34-96-3877859 > > > [EMAIL PROTECTED] > > > > > > > > > _______________________________________________ > > > BBB mailing list > > > [email protected] > > > http://www.bioinformatics.org/mailman/listinfo/bbb > > > > > > > > > > > -- > > K. Shameer > > NCBS - TIFR > > > > ========================================= > > | Indulge | Innovate | Inspire | > > _______________________________________________ > > BBB mailing list > > [email protected] > > http://www.bioinformatics.org/mailman/listinfo/bbb > > > > > -- > Javier Forment Millet > Instituto de Biología Celular y Molecular de Plantas (IBMCP) CSIC-UPV > Ciudad Politécnica de la Innovación (CPI) Edificio 8 E, Escalera 7 Puerta > E > Calle Ing. Fausto Elio s/n. 46022 Valencia, Spain > Tlf.:+34-96-3877858 > FAX: +34-96-3877859 > [EMAIL PROTECTED] > > > > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > > -- K. Shameer ------------------------------------------------------------ Computational Biology Lab, NCBS - TIFR Molecular Biophysics Unit, IISc _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
