I did this, I used a database of SNPs and positions from Refseq, and a database of gene starts and ends from Refseq. Then I cross referenced it using SQL. You can also use perl script. EB
On Mon, Apr 12, 2010 at 3:15 AM, päivi siivola <[email protected]> wrote: > Hi! > > I would be interested to find out genes around spesific SNPs (genes which are > ~ 1 MB away from SNP or less). What would be most efficient way to do this ? > Suggestions? > > > Thanks in advance! > > Päivi Rosenström > > .................................................................... > Luukku Plus -paketilla pääset eroon tila- ja turvallisuusongelmista. > Hanki Luukku Plus ja helpotat elämääsi. http://www.mtv3.fi/luukku > > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > -- Eugene Bolotin, Ph.D. Genetics Genomics and Bioinformatics University of California Riverside [email protected] Dr. Frances Sladek Lab _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
