I know you said it wasn't a good fit for your project, but I'll just add that I 
use BBEdit for this function. 

I keep journals to track all my projects at work, and I write in Markdown. I 
made a Project named—wait for it—Project Journals, and for each project, 
there's one running .md file. Each entry is delimited by a time stamp that's a 
clipping. (I actually do that with LaunchBar, but there's no reason you 
couldn't do it with BB's clippings and a keyboard shortcut. ) I tag each entry 
with `@tag` And then I can use live find to skip around the file by tags. I can 
use Multi-file finds to search across the Project. When I type the `@` and a 
letter, auto-complete kicks in so my tags stay consistent. When I get a new 
project, I make a fresh .md, and when a project is complete, I move the 
corresponding.md to an archive folder within the Project. I can use filters in 
the Find function to so I can search across live, archived or both at the same 
time. 

It works great for me. It just requires establishing your own process. You're 
welcome to steal mine—there I just open sourced it. ;-)

If that doesn't work for you, I've heard many people love Day One for work 
journals. I love it for the personal journal that I never update… it's 
beautifully made.

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