addressing just the flashing of the eMMC, it does take a very long time to flash and might be 40+ minutes IIRC the last time I did it and the speed of your SD card will effect this. Since you held the button on boot to trigger flashing and had the flashing image on the SD and it blinked 'for ever' before lighting all LEDs( this is what is supposed to happen). What was the result when you ejected the SD card and cycled power? Did you list the serial output of booting after the flashing?
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