1st of all IF you used the FETs shown on Adafruit they are logic level 
FETs, so you can drive them directly from the BB.

Resistors are only required if you had used the transistors instead of the 
FETs.

As discussed you missed the GND wire (Black) as shown on Adafruit.

Where did you measure the 200mV? From the BB GND to the outputs or 
elsewhere? As you don't have a common GND readings are pretty much 
meaningless.

FETs have a "large" capacitance on the Gate, without a common ground you 
could have several hundred (or thousands) volts of static charge for a very 
short period, but it could be large enough to kill the processor. Very 
likely if you have carpets around.

If you unplug everything you added to the BB will it boot up again? If not 
the above may be possible.

You seem to be using P9_12, P9_16 and P9_21 they should be safe to use as 
I'm using them on a couple of projects without problems, you MUST add the 
GND wire from any pin 1 or 2 of either P8 or P9 to the GND track of your 
breadboard.

I may think of something else later on....... meanwhile, as I said above, 
unplug everything from the BB and see if it powers up, if not it's shopping 
time again.

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