It's pretty easy when you use the matching tools:

a) disable rproc
b) disable cape-universal

Instead

c) enable uio_pruss driver
d) install libpruio

Then do pinmuxing by function setPin(Top, Ball, Mode) 
<http://users.freebasic-portal.de/tjf/Projekte/libpruio/doc/html/class_pru_io.html#a8d1cc5e85dcd08fd69c93bec07e17dc6>.
 
Single source, no external pinmuxing, no device tree overlay,

It's most likely that you can use some of the libpruio IO features (ADC, 
GPIO, TIMER. PWM, CAP, QEP). So PRU-0 for your firmware, PRU-1 for hardware 
driver libpruio. The first prove of concept can be done on ARM CPU, then 
switch to the PRU for the final shot (fast, hard real-time).

Ask for details if you're interested.

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