On Tue, 06 Oct 2009 12:11:47 +1000, Jyoti <jcutiep...@gmail.com> wrote:
Hello,
Hello Jyoti,
Can anyone help me to know how to make a script which can take any
sequences
by user as user input and give blast results as user output. This should
work in a server.
Any sequences can be any protein sequences in Fasta format. And Blast is
a
NCBI Blast main page which will be used and user should get the same
results
when he runs my server.
You could write your own cgi scripts or use the wwwblast package provided
by NCBI (which does exactly what you want) at:
ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/
Download the appropriate netblast-2.2.21 for your operating system and
architecture.
You can then have a look at the html files and cgi scripts to see how it
is done.
Any Bioinformatician can understand my problem. Else if anyone can just
give
me idea on how to give user input and get specific results accordingly..
Will be very helpful.
Just a note, most people here on this list are Perl experts (not
bioinformaticians) so they will have no idea what Blast is or how a fasta
file is formatted. If you want your question answered by the Perl experts
you probably want to explain your problem in more general terms and
elaborate.
Thanks in Advance.
Kind Regards,
Jyo
Hope that helps,
--
Dave Tang
Research Assistant
Institute for Molecular Biosciences
http://www.imb.uq.edu.au/
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