bioc-devel  

Messages by Thread

• [Bioc-devel] GBCC2025: New Scholarship Opportunities Available! Maria . Doyle
• [Bioc-devel] Query about microshades package suitability for Bioconductor Scott McLoud via Bioc-devel
  • Re: [Bioc-devel] Query about microshades package suitability for Bioconductor Lluís Revilla
• [Bioc-devel] FW: scifer problems reported in the Multiple platform build/check report for BioC 3.22 Rodrigo Arcoverde Cerveira
  • Re: [Bioc-devel] FW: scifer problems reported in the Multiple platform build/check report for BioC 3.22 Vincent Carey
• [Bioc-devel] EuroBioC2025 Carpentry Workshops – Registration Open! Maria . Doyle
• [Bioc-devel] EuroBioC2025 Registration Open! Maria . Doyle
• [Bioc-devel] Help Remote Installations Francesco Cecere
  • Re: [Bioc-devel] Help Remote Installations Lluís Revilla
  • Re: [Bioc-devel] Help Remote Installations Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] Help Remote Installations Henrik Bengtsson
  • Re: [Bioc-devel] Help Remote Installations Francesco Cecere
• [Bioc-devel] ssh key Simon Anders
  • Re: [Bioc-devel] ssh key Kern, Lori via Bioc-devel
• [Bioc-devel] ExpData in SummarizedExperiment Laurent Gatto via Bioc-devel
  • Re: [Bioc-devel] ExpData in SummarizedExperiment Michael Love
  • Re: [Bioc-devel] ExpData in SummarizedExperiment Hervé Pagès
  • Re: [Bioc-devel] ExpData in SummarizedExperiment Hervé Pagès
  • Re: [Bioc-devel] ExpData in SummarizedExperiment Michael Love
  • Re: [Bioc-devel] ExpData in SummarizedExperiment Hervé Pagès
  • Re: [Bioc-devel] ExpData in SummarizedExperiment Michael Love
  • Re: [Bioc-devel] ExpData in SummarizedExperiment Hervé Pagès
• [Bioc-devel] GBCC2025 Poster Abstracts - Submit by May 1st! Maria . Doyle
  • [Bioc-devel] GBCC2025 Poster Abstracts - Deadline extended to May 9th Maria . Doyle
  • [Bioc-devel] Final Reminder: GBCC2025 Poster abstract submissions close TODAY! Maria . Doyle
• [Bioc-devel] Reminder: EuroBioC2025 abstract deadline – 24 April Maria . Doyle
  • [Bioc-devel] Final Reminder: EuroBioC2025 abstract deadline – 24 April Maria . Doyle
• [Bioc-devel] pbmc_multimodal loading issue Hira Jabeen via Bioc-devel
• [Bioc-devel] Vignette Displaying Issues in Released Version of 3.21 Rongxin Zhang
• [Bioc-devel] Bioconductor 3.21 is Released! Kern, Lori via Bioc-devel
• [Bioc-devel] RELEASE_3_21 branch is now available and push access is re-enabled Kern, Lori via Bioc-devel
• [Bioc-devel] All commits to Bioconductor stopped from 7:30 am ET for release Kern, Lori via Bioc-devel
• [Bioc-devel] Last day to make commits before Bioconductor RELEASE 3.21 Kern, Lori via Bioc-devel
• [Bioc-devel] Unexpected Build Failure for BulkSignalR Jean-Philippe Villemin
  • Re: [Bioc-devel] Unexpected Build Failure for BulkSignalR Vincent Carey
  • Re: [Bioc-devel] Unexpected Build Failure for BulkSignalR Martin Grigorov
  • Re: [Bioc-devel] Unexpected Build Failure for BulkSignalR Jean-Philippe Villemin
  • Re: [Bioc-devel] Unexpected Build Failure for BulkSignalR Kern, Lori via Bioc-devel
• [Bioc-devel] Final Reminder: Submit Your Abstract for GBCC2025 by April 8th! Maria . Doyle
  • [Bioc-devel] GBCC2025 Scholarship Application Deadline – TODAY! Maria . Doyle
  • Re: [Bioc-devel] Final Reminder: Submit Your Abstract for GBCC2025 by April 8th! Sean Davis
  • Re: [Bioc-devel] Final Reminder: Submit Your Abstract for GBCC2025 by April 8th! Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] Final Reminder: Submit Your Abstract for GBCC2025 by April 8th! Franck RICHARD
• [Bioc-devel] KEGGREST error in build reports Katja Danielzik
  • Re: [Bioc-devel] KEGGREST error in build reports Kern, Lori via Bioc-devel
• [Bioc-devel] Important Bioconductor Release 3.21 Kern, Lori via Bioc-devel
  • [Bioc-devel] Important Bioconductor Release 3.21 Kern, Lori via Bioc-devel
• [Bioc-devel] Add second maintainer for strandCheckR Stevie Pederson
  • Re: [Bioc-devel] Add second maintainer for strandCheckR Kern, Lori via Bioc-devel
• [Bioc-devel] BiocParallel Error in SingleCellAlleleExperiment on palomino7/8 Jonas Schuck
• [Bioc-devel] WARNING from Rgl package Matteo Tiberti via Bioc-devel
  • Re: [Bioc-devel] WARNING from Rgl package Martin Grigorov
  • Re: [Bioc-devel] WARNING from Rgl package Martin Grigorov
  • Re: [Bioc-devel] WARNING from Rgl package Matteo Tiberti via Bioc-devel
  • Re: [Bioc-devel] WARNING from Rgl package Matteo Tiberti via Bioc-devel
• [Bioc-devel] GBCC2025 Abstract Submission Deadline Extended to April 8! Maria . Doyle
• [Bioc-devel] Release_3_20 branch is now frozen Kern, Lori via Bioc-devel
• [Bioc-devel] RELEASE_3_20 frozen in a few hours Kern, Lori via Bioc-devel
• [Bioc-devel] Author ORCID IDs on package landing pages Gordon Smyth via Bioc-devel
  • Re: [Bioc-devel] Author ORCID IDs on package landing pages Kern, Lori via Bioc-devel
  • [Bioc-devel] Author ORCID IDs on package landing pages Gordon Smyth
  • Re: [Bioc-devel] Author ORCID IDs on package landing pages Martin Maechler
• [Bioc-devel] segmentSeq problems reported for BioC 3.20 but not BioC 3.21: is there a need to change the code? Samuel Granjeaud IR/Inserm
  • Re: [Bioc-devel] segmentSeq problems reported for BioC 3.20 but not BioC 3.21: is there a need to change the code? Kern, Lori via Bioc-devel
• [Bioc-devel] List of Deprecated Packages for Bioc3.21 Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] List of Deprecated Packages for Bioc3.21 Lluís Revilla
  • Re: [Bioc-devel] List of Deprecated Packages for Bioc3.21 Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] List of Deprecated Packages for Bioc3.21 Lluís Revilla
  • Re: [Bioc-devel] List of Deprecated Packages for Bioc3.21 Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] List of Deprecated Packages for Bioc3.21 Lluís Revilla
• [Bioc-devel] Package Installation Fails on Linux Kunpeng2 Due to ‘concaveman’ and ‘sf’ Dependencies Jing Fu
  • Re: [Bioc-devel] Package Installation Fails on Linux Kunpeng2 Due to ‘concaveman’ and ‘sf’ Dependencies Martin Grigorov
  • Re: [Bioc-devel] Package Installation Fails on Linux Kunpeng2 Due to ‘concaveman’ and ‘sf’ Dependencies Martin Grigorov
  • Re: [Bioc-devel] Package Installation Fails on Linux Kunpeng2 Due to ‘concaveman’ and ‘sf’ Dependencies Martin Grigorov
  • Re: [Bioc-devel] Package Installation Fails on Linux Kunpeng2 Due to ‘concaveman’ and ‘sf’ Dependencies Martin Grigorov
• [Bioc-devel] Important Release Deadline RELEASE_3_20 Freeze and API Feature Freeze of devel Kern, Lori via Bioc-devel
• [Bioc-devel] mail notification support forum stopped Hooiveld, Guido via Bioc-devel
  • Re: [Bioc-devel] mail notification support forum stopped James W. MacDonald
  • Re: [Bioc-devel] mail notification support forum stopped Robert Castelo via Bioc-devel
• [Bioc-devel] GBCC2025: Upcoming Deadlines for Early Bird Registration, Abstract Submission, and Scholarships Maria . Doyle
• [Bioc-devel] Add second maintainer for limpa package Gordon Smyth via Bioc-devel
  • Re: [Bioc-devel] Add second maintainer for limpa package Kern, Lori via Bioc-devel
• [Bioc-devel] autonomics current release: to fix or not ? Aditya Bhagwat via Bioc-devel
  • Re: [Bioc-devel] autonomics current release: to fix or not ? Kern, Lori via Bioc-devel
• [Bioc-devel] EBSeq Installation Error – C++ Version Update xiuyu
• [Bioc-devel] C++ compiler error on kunpeng2 ? Katja Danielzik
  • Re: [Bioc-devel] C++ compiler error on kunpeng2 ? Martin Grigorov
  • Re: [Bioc-devel] C++ compiler error on kunpeng2 ? Martin Grigorov
  • Re: [Bioc-devel] C++ compiler error on kunpeng2 ? Katja Danielzik
• [Bioc-devel] possible ld issues at palomino7 Oleksii Nikolaienko
• [Bioc-devel] Bioconductor archive? Lluís Revilla
  • Re: [Bioc-devel] Bioconductor archive? Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] Bioconductor archive? Lluís Revilla
  • Re: [Bioc-devel] Bioconductor archive? Sean Davis
  • Re: [Bioc-devel] Bioconductor archive? Lluís Revilla
• [Bioc-devel] Adding new maintainer to package TFEA.ChIP Laura Puente Santamaría
  • Re: [Bioc-devel] Adding new maintainer to package TFEA.ChIP Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] Adding new maintainer to package TFEA.ChIP Laura Puente Santamaría
  • Re: [Bioc-devel] Adding new maintainer to package TFEA.ChIP Kern, Lori via Bioc-devel
• [Bioc-devel] Microshades: Appropriate for BioConductor Scott McLoud via Bioc-devel
• Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Robert Castelo via Bioc-devel
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Kasper Daniel Hansen
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Robert Castelo via Bioc-devel
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Kasper Daniel Hansen
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Robert Castelo via Bioc-devel
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Kasper Daniel Hansen
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Robert Castelo via Bioc-devel
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Ramon Diaz-Uriarte
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Luca Lepore via Bioc-devel
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Hervé Pagès
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz James W. MacDonald
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Luca Lepore via Bioc-devel
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Andrew McDavid
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Kasper Daniel Hansen
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Andrew McDavid
  • Re: [Bioc-devel] failing with non-reproducible error "no slot of name "name" for this object of class "pEdge"" from Rgraphviz Andrew McDavid
• [Bioc-devel] New version of rmspc - error Meriem Bahda
  • Re: [Bioc-devel] New version of rmspc - error Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] New version of rmspc - error Meriem Bahda
  • Re: [Bioc-devel] New version of rmspc - error Martin Grigorov
  • Re: [Bioc-devel] New version of rmspc - error Meriem Bahda
  • Re: [Bioc-devel] New version of rmspc - error Andres Wokaty
  • Re: [Bioc-devel] New version of rmspc - error Meriem Bahda
  • Re: [Bioc-devel] New version of rmspc - error Meriem Bahda
• Re: [Bioc-devel] Readme in Rmd and md formats; .Rbuildignore'd files Marcel Ramos Pérez
  • Re: [Bioc-devel] Readme in Rmd and md formats; .Rbuildignore'd files Lluís Revilla
  • Re: [Bioc-devel] Readme in Rmd and md formats; .Rbuildignore'd files Marcel Ramos
  • Re: [Bioc-devel] Readme in Rmd and md formats; .Rbuildignore'd files Lluís Revilla
  • Re: [Bioc-devel] Readme in Rmd and md formats; .Rbuildignore'd files Martha M
• [Bioc-devel] Bioconductor 3.21 db0s, OrgDbs, and TxDbs now available Kern, Lori via Bioc-devel
• [Bioc-devel] PRONE Release Branch RELEASE_3_20 Not Updating Lisi Arend
  • Re: [Bioc-devel] PRONE Release Branch RELEASE_3_20 Not Updating Kern, Lori via Bioc-devel
• [Bioc-devel] GBCC2025: Expression of Interest for Training Topics Maria . Doyle
• [Bioc-devel] Bioconductor 3.21 Release Schedule Kern, Lori via Bioc-devel
• [Bioc-devel] S4Vectors installation error: no setequal S4 generic Laurent Gatto via Bioc-devel
• [Bioc-devel] Deprecating benchmarkfdrData2019 ExperimentHub package Stephanie Hicks via Bioc-devel
• [Bioc-devel] Error during download data by GDCquery_clinic Jarosław Sikora via Bioc-devel
  • Re: [Bioc-devel] Error during download data by GDCquery_clinic Kern, Lori via Bioc-devel
• [Bioc-devel] Rust compilation environment in Bioconductor Sun Wenjie
  • Re: [Bioc-devel] Rust compilation environment in Bioconductor Andres Wokaty
• [Bioc-devel] Issue with devel package Shreyan Gupta via Bioc-devel
  • Re: [Bioc-devel] Issue with devel package Kern, Lori via Bioc-devel
• [Bioc-devel] How to provide hotfix for current release Alexander Blume
  • Re: [Bioc-devel] How to provide hotfix for current release James W. MacDonald
  • Re: [Bioc-devel] How to provide hotfix for current release Alexander Blume
  • Re: [Bioc-devel] How to provide hotfix for current release Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] How to provide hotfix for current release Alexander Blume
• [Bioc-devel] useR! 2025 at Duke University in Durham, NC (August 8-10, 2025) Maria . Doyle
• [Bioc-devel] crupR submission re-activation (again) Persia Akbari Omgba
  • Re: [Bioc-devel] crupR submission re-activation (again) Kern, Lori via Bioc-devel
• [Bioc-devel] build/check problems with 'hyperdraw' Paul Murrell
  • Re: [Bioc-devel] build/check problems with 'hyperdraw' Robert M. Flight
  • Re: [Bioc-devel] build/check problems with 'hyperdraw' Paul Murrell
• [Bioc-devel] FW: [US-RSE Association] USRSE'25 Call for Submissions Sean Davis
• [Bioc-devel] EuroBioC2025: Abstract Submissions Open! Maria . Doyle
• Re: [Bioc-devel] Bioconductor checking error: example failed due to a suggest package of a dependecy package of my package Kern, Lori via Bioc-devel
• [Bioc-devel] Add maintainer to package TreeAndLeaf Milena Andreuzo
  • Re: [Bioc-devel] Add maintainer to package TreeAndLeaf Kern, Lori via Bioc-devel
• [Bioc-devel] Job: Research Software Engineer - Bioconductor tools for biological data science and AI Wolfgang Huber
• [Bioc-devel] Excluding internal functions from package manual Burak Ogan Mancarci
  • Re: [Bioc-devel] Excluding internal functions from package manual Hervé Pagès
• [Bioc-devel] Add a maintainer for MuData Danila Bredikhin
  • Re: [Bioc-devel] Add a maintainer for MuData Kern, Lori via Bioc-devel
• [Bioc-devel] Galaxy Bioconductor Community Conference (GBCC2025) Registration Open! Maria . Doyle
• [Bioc-devel] experimenthub package timeout and resubmission Kevin Stachelek
  • Re: [Bioc-devel] experimenthub package timeout and resubmission Kern, Lori via Bioc-devel
• Re: [Bioc-devel] Additional maintainer for package AssessORFData Kern, Lori via Bioc-devel
• [Bioc-devel] Announcing the EuroBioC2025 Sticker Design Contest! Maria . Doyle
• [Bioc-devel] ExperimentHub ft resource with password Laurent Gatto via Bioc-devel
  • Re: [Bioc-devel] ExperimentHub ft resource with password Robert Castelo via Bioc-devel
  • Re: [Bioc-devel] ExperimentHub ft resource with password Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] ExperimentHub ft resource with password Mike Smith
  • Re: [Bioc-devel] ExperimentHub ft resource with password Sean Davis
• [Bioc-devel] spoon problems reported Multiple platform build/check BioC 3.21 Kinnary Shah
  • Re: [Bioc-devel] spoon problems reported Multiple platform build/check BioC 3.21 Kern, Lori via Bioc-devel
• [Bioc-devel] Announcing the GBCC2025 Logo Design Winner! Maria . Doyle
• [Bioc-devel] Bioconductor Course, Kenya 2025: Applications Open! Maria . Doyle
• [Bioc-devel] Segfault in viewMeans from IRanges on R-devel with Bioc-devel hdash.w...@gmail.com
  • Re: [Bioc-devel] Segfault in viewMeans from IRanges on R-devel with Bioc-devel Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] Segfault in viewMeans from IRanges on R-devel with Bioc-devel hdash.w...@gmail.com
• Re: [Bioc-devel] groHMM Bioconductor Pariksheet Nanda via Bioc-devel
  • Re: [Bioc-devel] groHMM Bioconductor Tulip Nandu
• [Bioc-devel] Deprecation request for CBEA Quang Nguyen
  • Re: [Bioc-devel] Deprecation request for CBEA Kern, Lori via Bioc-devel
• [Bioc-devel] Cleaned large datafiles in "batchCorr" package under review Anton Ribbenstedt
  • Re: [Bioc-devel] Cleaned large datafiles in "batchCorr" package under review Kern, Lori via Bioc-devel
• [Bioc-devel] Code of Conduct committee announcement Kevin RUE
• [Bioc-devel] Issue Installing hugene10stv1cdf on R 4.4.2 Sadaf Pouladi
  • Re: [Bioc-devel] Issue Installing hugene10stv1cdf on R 4.4.2 Kern, Lori via Bioc-devel
  • Re: [Bioc-devel] Issue Installing hugene10stv1cdf on R 4.4.2 Vincent Carey
• [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Axel Klenk
  • Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Helena L. Crowell
  • Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Axel Klenk
  • Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Helena L. Crowell
  • Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Hervé Pagès
  • Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Kasper Daniel Hansen
  • Re: [Bioc-devel] Problem with S4 method dispatch: method found for SummarizedExperiment, but not SingleCellExperiment Axel Klenk
  • Re: [Bioc-devel] Problem with S4 method dispatch: .. bug in methods package ? SummarizedExperiment, but not SingleCellExperiment Martin Maechler
  • Re: [Bioc-devel] Problem with S4 method dispatch: .. bug in methods package ? SummarizedExperiment, but not SingleCellExperiment Axel Klenk
  • Re: [Bioc-devel] Problem with S4 method dispatch: .. bug in methods package ? SummarizedExperiment, but not SingleCellExperiment Martin Maechler

• Earlier messages