Dear Stephanie Gogarten, В Fri, 6 Mar 2026 16:22:27 -0800 Stephanie Gogarten <[email protected]> пишет:
> GENESIS is failing on the mac builder kjohnson3 > <https://bioconductor.org/checkResults/devel/bioc-LATEST/GENESIS/kjohnson3-buildsrc.html> > with an error that I don't understand. >> Error in `[.data.table`: >> ! attempt access index 3/3 in VECTOR_ELT >> 16. x[, `:=`("allele.index", seq_len(.N)), by = "variant.id"] >> 17. data.table:::`[.data.table`(...) The macOS builder 'kjohnson3' has data.table version 1.17.8 installed [*]. The 1.17.x series was increasingly incompatible with R-devel, which we only fixed in 1.18.0 (and then fixed again in 1.18.2.1). This is one of those problems: https://github.com/Rdatatable/data.table/issues/7486 Installing data.table 1.18.2.1 from CRAN on kjohnson3 should fix the problem. -- Best regards, Ivan [*] https://bioconductor.org/checkResults/devel/bioc-LATEST/kjohnson3-R-instpkgs.html _______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
