Hello,
Would it be possible to include an option that firstly goes through all of the
strings and runs a sliding window along them, to find all the unique k-mers
present in the dataset ? This would avoid having a sparse matrix with many
columns of all zero counts, when a larger value of width is specified.
--------------------------------------
Dario Strbenac
PhD Student
University of Sydney
Camperdown NSW 2050
Australia
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