On 03/28/2013 08:36 PM, Wei Shi wrote:
Dear Bioc core team,
Our Rsubead package got a build error on george2, but we could not reproduce
the error on our local linux machine. It is successfully built and installed on
our linux computer. Is it possible that you can give us more information about
what might cause this error?
Hi Wei -
The configure file fails
./configure: 9: ./configure: [[: not found
so the wrong Makefile is being used. You need to link to libz
$ svn diff Makevars.Linux
Index: Makevars.Linux
===================================================================
--- Makevars.Linux (revision 74972)
+++ Makevars.Linux (working copy)
@@ -1,2 +1,2 @@
PKG_CFLAGS+=-DMAKE_FOR_EXON
-PKG_LIBS+=-lpthread -DMAKE_FOR_EXON
+PKG_LIBS+=-lz -lpthread -DMAKE_FOR_EXON
'inline' functions need to be declared 'static'
$ svn diff sorted-hashtable.c
Index: sorted-hashtable.c
===================================================================
--- sorted-hashtable.c (revision 74972)
+++ sorted-hashtable.c (working copy)
@@ -851,7 +851,7 @@
// }
//
-inline unsigned int load_int32(FILE * fp)
+static inline unsigned int load_int32(FILE * fp)
{
int ret;
int read_length;
@@ -860,7 +860,7 @@
return ret;
}
-inline long long int load_int64(FILE * fp)
+static inline long long int load_int64(FILE * fp)
{
long long int ret;
int read_length;
Many thanks,
Wei
______________________________________________________________________
The information in this email is confidential and inte...{{dropped:16}}
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
