Hi Ulrich, While not for Bioconductor, this Google's R style guide might be useful:
http://google-styleguide.googlecode.com/svn/trunk/google-r-style.html Best wishes, Alejandra On 26 March 2013 11:48, Sean Davis <sdav...@mail.nih.gov> wrote: > On Tue, Mar 26, 2013 at 7:27 AM, Ulrich Bodenhofer < > bodenho...@bioinf.jku.at > > wrote: > > > On 03/26/2013 12:18 PM, Laurent Gatto wrote: > > > >> On 26 March 2013 09:26, Ulrich Bodenhofer <bodenho...@bioinf.jku.at> > >> wrote: > >> > >>> Dear colleagues, > >>> > >>> One of my students is currently working on a package that we plan to > >>> submit > >>> to Bioconductor. I want him to adhere to the Bioconductor coding > >>> standards > >>> which I thought were available at > >>> http://wiki.fhcrc.org/bioc/**Coding_Standards< > http://wiki.fhcrc.org/bioc/Coding_Standards>. > >>> > >> > >> > Hi, Ulrich. > > This is the correct URL, I believe. I think the wiki is just down right > now. I'd expect that someone will get to it when it gets closer to > business hours in Seattle. > > > > However, it turned out that the > >>> site is down or has been moved. I searched for them and only found > >>> https://phssec1.fhcrc.org/**secureplone/www.bioconductor.** > >>> org/developers/OLD/devwiki/**CodingStandards< > https://phssec1.fhcrc.org/secureplone/www.bioconductor.org/developers/OLD/devwiki/CodingStandards > > > >>> which is somehow what I expect, but seems quite old (last edited 7 > years > >>> ago). So where have the guidelines gone? > >> > >> > Yep, that is old and probably appropriately ignored. > > Sean > > > > > Thanks in advance for your any kind > >>> of help! > >> > >> What about http://bioconductor.org/**developers/package-guidelines/< > http://bioconductor.org/developers/package-guidelines/> > >> > >> Laurent > >> > >> Of course, I know this page, but this is not what I was looking for. > > While the package guidelines pagedeals with the structure and design of > > packages, I was looking for guidelines how to write code, i.e. > indentation, > > spacing, line length, etc. > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
