Hello,
The import function depends on a function in Biostrings that is not imported.
> library(rtracklayer)
> import("E:\\Dario\\scaffolds.fasta")
Error in get(paste("read", match.arg(type), "StringSet", sep = "")) :
object 'readDNAStringSet' not found
> sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: x86_64-w64-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252
[3] LC_MONETARY=English_Australia.1252 LC_NUMERIC=C
[5] LC_TIME=English_Australia.1252
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] rtracklayer_1.20.4 GenomicRanges_1.12.4 IRanges_1.18.2
BiocGenerics_0.6.0
loaded via a namespace (and not attached):
[1] Biostrings_2.28.0 bitops_1.0-5 BSgenome_1.28.0 RCurl_1.95-4.1
[5] Rsamtools_1.12.3 stats4_3.0.1 tools_3.0.1 XML_3.98-1.1
[9] zlibbioc_1.6.0
--------------------------------------
Dario Strbenac
PhD Student
University of Sydney
Camperdown NSW 2050
Australia
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