hi,
i'm interested in having classes 'VcfFile' and 'VcfFileList', analogous
to 'BamFile'/'BamFileList' or 'Bcf/BcfFileList,' with their
corresponding functionality to ease manipulating, in this case, VCF
files. i thought i could sort of copy&paste code from Rsamtools but the
existing definitions of classes and methods rely on the Rsamtools
internal functions '.RsamtoolsFile' and '.RsamtoolsFileList' which are
not exported, and thus i cannot use them.
i might be following the wrong path, so i'd like to ask how should i
proceed to have this kind of functionality to handle VCF files,
analogous to the existing one in Rsamtools to handle BAM or BCF files.
thanks!
robert.
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