This seems like what I'm looking for, but it doesn't do what I'd expect: R> rc.options(ipck=TRUE) R> rc.options()$ipck [1] TRUE R> require(Biostr\t # nothing happens
Should I be using one of the intermediate/undocumented functions to grab a list of possible completions? Thanks, --t R> sessionInfo() R Under development (unstable) (2013-11-11 r64202) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] parallel stats graphics grDevices datasets utils methods [8] base other attached packages: [1] Matrix_1.1-0 [2] frma_1.15.1 [3] BSgenome.Hsapiens.UCSC.hg19_1.3.19 [4] BSgenome_1.31.6 [5] Biostrings_2.31.1 [6] Homo.sapiens_1.1.1 [7] TxDb.Hsapiens.UCSC.hg19.knownGene_2.10.1 [8] org.Hs.eg.db_2.10.1 [9] GO.db_2.10.1 [10] RSQLite_0.11.4 [11] DBI_0.2-7 [12] OrganismDbi_1.5.0 [13] GenomicFeatures_1.15.2 [14] AnnotationDbi_1.25.3 [15] Biobase_2.23.2 [16] chromophobe_0.79 [17] fastcluster_1.1.11 [18] pheatmap_0.7.7 [19] ggplot2_0.9.3.1 [20] reshape2_1.2.2 [21] GenomicRanges_1.15.9 [22] XVector_0.3.1 [23] IRanges_1.21.8 [24] BiocGenerics_0.9.0 [25] BiocInstaller_1.13.2 [26] gtools_3.1.1 [27] devtools_1.3 loaded via a namespace (and not attached): [1] affxparser_1.35.0 affy_1.41.1 affyio_1.31.0 [4] biomaRt_2.19.1 bit_1.1-10 bitops_1.0-6 [7] codetools_0.2-8 colorspace_1.2-4 dichromat_2.0-0 [10] digest_0.6.3 evaluate_0.5.1 ff_2.2-12 [13] foreach_1.4.1 GenomicAlignments_0.99.2 graph_1.41.1 [16] grid_3.1.0 gtable_0.1.2 httr_0.2 [19] iterators_1.0.6 labeling_0.2 lattice_0.20-24 [22] MASS_7.3-29 matrixStats_0.8.12 memoise_0.1 [25] munsell_0.4.2 oligo_1.27.0 oligoClasses_1.25.1 [28] plyr_1.8 preprocessCore_1.25.0 proto_0.3-10 [31] R.methodsS3_1.5.2 RBGL_1.39.1 RColorBrewer_1.0-5 [34] RCurl_1.95-4.1 Rsamtools_1.15.7 rtracklayer_1.23.3 [37] scales_0.2.3 splines_3.1.0 stats4_3.1.0 [40] stringr_0.6.2 tools_3.1.0 whisker_0.3-2 [43] XML_3.98-1.1 zlibbioc_1.9.0 *He that would live in peace and at ease, * *Must not speak all he knows, nor judge all he sees.* Benjamin Franklin, Poor Richard's Almanack<http://archive.org/details/poorrichardsalma00franrich> On Wed, Nov 13, 2013 at 8:43 AM, Deepayan Sarkar <deepayan.sar...@gmail.com>wrote: > On Wed, Nov 13, 2013 at 10:06 PM, Tim Triche, Jr. <tim.tri...@gmail.com> > wrote: > > How hard would this be to set up (e.g. using a mechanism like > > AnnotationHub's)? > > > > I'm really lazy and wondering if the time spent writing a little package > > might be recovered when I want to load a BSgenome or SNPlocs (or...) > > package this way. > > > > Plus if the mechanism could involve caching, maybe that could work for > > biocLite too. > > > > Just a thought. How much trouble am I looking at and what should I watch > > out for? > > Set > > rc.options(ipck = TRUE) > > and try again. Is this what you are looking for? > > -Deepayan > > > thanks, > > > > --t > > > > > > *He that would live in peace and at ease, * > > *Must not speak all he knows, nor judge all he sees.* > > > > Benjamin Franklin, Poor Richard's > > Almanack<http://archive.org/details/poorrichardsalma00franrich> > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
