Aggregating coverage over multiple samples is a popular request recently. I'm happy to support this effort, but I thinks someone in Seattle is going to have to take the lead on it.
On Mon, Nov 18, 2013 at 2:36 PM, Michael Love <michaelisaiahl...@gmail.com>wrote: > a discussion came up on devel last year about looking at a genomic range > over multiple samples and multiple experiments ( > > https://stat.ethz.ch/pipermail/bioc-devel/attachments/20120920/93a4fb61/attachment.pl > ) > > stepping aside the multiple experiment part, I'm interested in > BigWigViews() with fixed ranges across samples. Has there been any more > thoughts in this direction? > > BigWigViews would be incredibly useful for genomics applications where we > want to scan along the genome looking at lots of samples. BigWig offers a > concise representation of the information compared to BAM files. > > What I am trying now is using import(BigWigFile, which=gr) on files one by > one, and then binding the coverage together. > > best, > > Mike > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
