Hi Florian,
On 12/11/2013 07:26 AM, Hahne, Florian wrote:
Hi Herve,
is there really a hard requirement on the input files to forgeBSgenomeDataPkg
to be unzipped? Even though one would usually only build a particular BSGenome
package once, this seems to be such an arcane requirement nowadays with gzip
connections and the like.
Agreed. This needs to be modernized. forgeBSgenomeDataPkg() uses
readDNAStringSet() internally to load the FASTA files.
readDNAStringSet() doesn't support gzip'ed connections at the
moment but it's on my list to add it.
Cheers,
H.
Florian
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Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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