Hi Charles,
----- Original Message ----- > From: "Charles Warden" <cwar...@coh.org> > To: bioc-devel@r-project.org > Sent: Monday, January 27, 2014 10:45:42 AM > Subject: [Bioc-devel] Problem running Perl script with R-devel > > Hi, > > I am testing out my newly released COHCAP package: > > http://bioconductor.org/packages/devel/bioc/html/COHCAP.html > > I didn't see any warnings when I created the package, and there > weren't any warnings when Bioconductor tests the package (on any of > the operating systems). > > However, I have been testing the package using R-devel (since the > package is a currently only available as a devel package, it looks > like I can only use lazy loading with R-devel), and I've noticed > that the Perl command (creating the .wig files within the function > COHCAP.site()) doesn't work properly for either the truncated demo > dataset that is included with the package or the entire dataset that > I am trying to use to test the package. > > To be clear, I can download COHCAP and COHCAPanno and use R CMD > INSTALL to run the package in the normal version of R (v.3.0.2), and > the package runs just fine with both the truncated and full > datasets. > > I am trying to provide users with instructions on how to use the > package while it is only available as a devel version. I'm trying > to make the instructions as simple as possible, so I was hoping to > use the lazy loading via biocLite("COHCAP"). > > I am running R-devel on Windows (v.3.1.0 pre-release) and the > system() command script is existing with status 2. > > Does anyone know what is causing this error to specifically occur > with R-devel? > Can you provide the exact commands you entered which caused the error? As well as the output of sessionInfo()? Thanks, Dan > Thanks, > Charles > > > > --------------------------------------------------------------------- > *SECURITY/CONFIDENTIALITY WARNING: > This message and any attachments are intended solely for the > individual or entity to which they are addressed. This communication > may contain information that is privileged, confidential, or exempt > from disclosure under applicable law (e.g., personal health > information, research data, financial information). Because this > e-mail has been sent without encryption, individuals other than the > intended recipient may be able to view the information, forward it > to others or tamper with the information without the knowledge or > consent of the sender. If you are not the intended recipient, or the > employee or person responsible for delivering the message to the > intended recipient, any dissemination, distribution or copying of > the communication is strictly prohibited. If you received the > communication in error, please notify the sender immediately by > replying to this message and deleting the message and any > accompanying files from your system. If, due to the security risks, > you do not wi! > sh to receive further communications via e-mail, please reply to > this message and inform the sender that you do not wish to receive > further e-mail from the sender. (fpc5p) > --------------------------------------------------------------------- > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
