are you installing with: biocLite("DESeq2")
hmm these don't look like Rcpp* version numbers. What do you get with library(Rcpp) library(RcppArmadillo) sessionInfo() On Wed, Jun 18, 2014 at 1:13 PM, jarod...@libero.it <jarod...@libero.it> wrote: > Thanks for your help > I have the 2.0 when i try to install 3.8 I have the error on version of gcc > on Rhel5.5 > > > >>----Messaggio originale---- >>Da: michaelisaiahl...@gmail.com >>Data: 18/06/2014 17.44 >>A: "jarod...@libero.it"<jarod...@libero.it> >>Cc: "bioc-devel@r-project.org"<bioc-devel@r-project.org> >>Ogg: Re: [Bioc-devel] Problem on Installation of DEseq2 >> >>hi Jarod, >> >>What version of Rcpp and RcppArmadillo is installed? >> >>Mike >> >>On Wed, Jun 18, 2014 at 11:35 AM, jarod...@libero.it <jarod...@libero.it> > wrote: >>> >>>> >I can't install this DESEq2 on the RHEL 5.5 server: >>>> > >>>> >* installing *source* package ‘RcppArmadillo’ ... >>>> >** package ‘RcppArmadillo’ successfully unpacked and MD5 sums >>> checked >>>> >* checking LAPACK_LIBS: divide-and-conquer complex SVD unavailable > via >>> R- >>>> >supplied LAPACK >>>> >* divide-and-conquer algorithm for complex SVD will be redirected to >>> default >>>> >** libs >>>> >g++ -I/illumina/software/PROG/R302/lib64/R/include -DNDEBUG - >>>> >I/usr/local/include -I" >>>> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include" -I.. >>> /inst/include >>>> - >>>> >fpic -g -O2 -c RcppArmadillo.cpp -o RcppArmadillo.o >>>> >In file included from ../inst/include/armadillo:42, >>>> > from ../inst/include/RcppArmadilloForward.h:37, >>>> > from ../inst/include/RcppArmadillo.h:30, >>>> > from RcppArmadillo.cpp:22: >>>> >../inst/include/armadillo_bits/compiler_setup.hpp:119:6: error: #error >>> "*** >>>> >Need a newer compiler ***" >>>> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: >>> In >>>> >member function ‘void Rcpp::Date::update_tm()’: >>>> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: >>> 108: >>>> >>>>- Ignored: >>>> >warning: converting to ‘time_t’ from ‘double’ >>>> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: >>> In >>>> >function ‘Rcpp::Date Rcpp::operator+(const Rcpp::Date&, int)’: >>>> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: >>> 139: >>>> >warning: converting to ‘time_t’ from ‘double’ >>>> >make: *** [RcppArmadillo.o] Error 1 >>>> >ERROR: compilation failed for package ‘RcppArmadillo’ >>>> >* removing â > €˜/illumina/software/PROG/R302/lib64/R/library/RcppArmadilloâ >>> €™ >>>> >* restoring previous >>>> >‘/illumina/software/PROG/R302/lib64/R/library/RcppArmadillo’ >>>> > >>>> >The downloaded source packages are in >>>> > ‘/tmp/Rtmp30ZzKT/downloaded_packages’ >>>> >Updating HTML index of packages in '.Library' >>>> >Making 'packages.html' ... done >>>> >Warning messages: >>>> >1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : >>>> > installation of package ‘RcppArmadillo’ had non-zero exit status >>>> >2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : >>>> > installation of package ‘DESeq2’ had non-zero exit status >>>> >3: In install.packages(update[instlib == l, "Package"], l, contriburl >>>> > >>>> >sessionInfo() >>>> >R version 3.0.2 (2013-09-25) >>>> >Platform: x86_64-unknown-linux-gnu (64-bit) >>>> > >>>> >locale: >>>> > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C >>>> > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 >>>> > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 >>>> > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C >>>> > [9] LC_ADDRESS=C LC_TELEPHONE=C >>>> >[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C >>>> > >>>> >attached base packages: >>>> >[1] stats graphics grDevices utils datasets methods >>> base >>>> > >>>> >other attached packages: >>>> >[1] BiocInstaller_1.12.1 >>>> > >>>> >loaded via a namespace (and not attached): >>>> >[1] tools_3.0. >>>> >Any Idea how can resolve? >>>> > >>>> > >>>> >>>> >>>> >>>>- Done. >>>> >>>> >>> >>> _______________________________________________ >>> Bioc-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel