Hi Dario, Isn't an easier fix to simply add
ImportFrom(limma, loessFit) in your NAMESPACE file? Best, Jim On 6/26/2014 12:00 AM, Dario Strbenac wrote:
Hello, I am writing a package that has a function that uses estimateGLMRobustDisp, leading to an error : Error in dispBinTrend(y, design, offset = offset, method.trend = "loess", : could not find function "loessFit" Calls: edgeRselection ... estimateGLMTrendedDisp -> estimateGLMTrendedDisp.default -> dispBinTrend I import estimateGLMRobustDisp from edgeR in my NAMESPACE file. This error is because edgeR depends on limma, rather than importing from it. I want to avoid using parent.env<- and .onLoad to get around the problem. Is there any hope of modifying the edgeR description file to have limma in the Imports field ? -------------------------------------- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
-- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
