Dear all, My name is Kevin Rue-Albrecht and I am working to improve a package currently in review by Bioconductor. I am blocked while trying to add the final touch to the package.
I was wondering about the recommended way of inserting bibliographic references in the body of the package vignette using R Studio to build the source package. I am developing the package using R Studio on a standard Linux Ubuntu 12.04 distribution. The package contains a Sweave vignette (.Rnw file) which succesfully compiles on the Bioconductor package tracker with bits of R code and bits of LaTeX. So far, I have only found this page which confuses me for different reasons ( http://texblog.org/2013/08/20/rknitr-automatic-bibliography-generation-with-biblatex-in-rstudio/ ): - It refers to the knitr type of vignette, not the Sweave that I have used so far - At some point the person writes "tell RStudio where to find the .tex, .bib and .bst files" - In the minimal example, he seems to include the .bib file into the source of the vignette file. I probably should not do that with many references. I haven't found the information in the "Writing R Extensions" page, the Bioconductor pacakge guidelines or the archives of this mailing list. - Can anyone point me to a place where my question might be already answered that I haven't found yet? - Or can anyone tell me how to store the references (probably in a separate file), and how to refer to them in the .Rnw vignette file so that it compiles properly on the Bioconductor servers? Many thanks in advance ! Best regards, Kevin -- Kévin RUE-ALBRECHT Wellcome Trust Computational Infection Biology PhD Programme University College Dublin Ireland http://fr.linkedin.com/pub/k%C3%A9vin-rue/28/a45/149/en [[alternative HTML version deleted]]
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