'flowCore' does support CyTOF fcs as long as it follows the fcs 
standard.( "FCS2.0", "FCS3.0" and "FCS3.1")
Based on your check by 'isFCSfile',  Your fcs file is probably not any 
one of these.
>> *From: *Hurlimann Niklaus <niklaus.hurlim...@chuv.ch 
>> <mailto:niklaus.hurlim...@chuv.ch>>
>> *Subject: **[Bioc-devel] read fcs file from CyTOF with*
>> *Date: *September 12, 2014 at 6:28:49 AM PDT
>> *To: *"bioc-devel@r-project.org <mailto:bioc-devel@r-project.org>" 
>> <bioc-devel@r-project.org <mailto:bioc-devel@r-project.org>>
>>
>> I tried to upload an fcs-file generated by CyTOF with read.FCS() from 
>> the flowCore package. If I do the check with isFCSfile(files) it 
>> gives me the answer FALSE, obviously it does not recognize the fcs 
>> file as such. I am quite new in handling such type of data.
>> My question is the flowCore package compatible with CyTOF fcs or not?
>>
>> Your comments are very much appreciated
>>
>> Niklaus Hurlimann
>>
>>
>>
>>
>


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