On 19 September 2014 18:07, Michael Lawrence wrote: > Hi guys, > > This is the problem of mapping back and forth between coordinate spaces, > such as between genomic and transcript space. I think there was some > progress this release cycle (introduction of mapCoords generic, etc), but I > think there is yet more to do. For example, transcriptLocs2RefLocs could be > given a ranges-based wrapper that conforms to the mapCoords API somehow. > Could we please put this on the TODO list of someone (in Seattle) for the > next release cycle?
And I would be very interested in (and slowly working towards) generalising this to proteomics data. For now, there is a rather long description in [1], but eventually, it should be standardised. I was not aware of mapCoords and will read about it. Laurent [1] http://bioconductor.org/packages/devel/bioc/vignettes/Pbase/inst/doc/mapping.html > Michael > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
