----- Original Message ----- > From: "Daniel Schmolze" <s...@schmolze.com> > To: bioc-devel@r-project.org > Sent: Monday, October 6, 2014 7:52:49 AM > Subject: [Bioc-devel] odd vignette dependency issue > > I'm getting a vignette error from the BioC build servers that I can't > reproduce locally:
What's the name of your package? Dan > > * creating vignettes ... ERROR > Quitting from lines 116-119 (saps.Rmd) > Error: processing vignette 'saps.Rmd' failed with diagnostics: > could not find function "survfit" > > The offending lines in saps.Rmd call a function in my package, > plotKM(), which in turn calls makes the following call: > > survcomp::km.coxph.plot( > formula.s = survival::Surv(survivalTimes, followup) ~ cluster, > data.s = dd, main.title=title, y.label=y.label, x.label=x.label, > o.text=text, ...) > > survfit() is part of the "survival" package, and nowhere is it > explicitly called, but I suppose it's being called from within > km.coxph.plot()? My package imports both the "survival" and > "survcomp" > packages in the DESCRIPTION file. > > R CMD check, R CMD check --as-cran, and R CMD BiocCheck all work fine > on several different computers for me. Any ideas? > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel