Hi Raffaele, You can find it under the name BSgenome.Hsapiens.NCBI.GRCh38 http://bioconductor.org/packages/release/data/annotation/html/BSgenome.Hsapiens.NCBI.GRCh38.html (http://bioconductor.org/packages/release/data/annotation/html/BSgenome.Hsapiens.NCBI.GRCh38.html) The naming of the chromosomes has been harmonized between UCSC and GRCh with the new release, so there should be no need for two versions at the genome level. Best Julian On Tue, Dec 2, 2014 at 15:12, Raffaele Adolfo Calogero wrote: Dear Bioc Team, I am the maintainer of chimera package. Recently some of the users asked for the possibility to use chimera with fusions detected on hg38 human genome. I checked for the availability of hg38 as BSgenome but I did not find it in Bioc repository, as instead there is TxDb.Hsapiens.UCSC.hg38.knownGene. I would like to know if it is planned the release of hg38 as BSgenome, maybe in the next Bioc release. In case it is not planned could please suggest me what to read to build it? Cheers Raffaele
-- ---------------------------------------- Prof. Raffaele A. Calogero Bioinformatics and Genomics Unit MBC Centro di Biotecnologie Molecolari Via Nizza 52, Torino 10126 Tel. ++39 0116706457 Fax ++39 0112366457 Mobile ++39 3333827080 email: [email protected] (mailto:[email protected]) [email protected] (mailto:[email protected]) www: http://www.bioinformatica.unito.it (http://www.bioinformatica.unito.it) [[alternative HTML version deleted]] _______________________________________________ [email protected] (mailto:[email protected]) mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel (https://stat.ethz.ch/mailman/listinfo/bioc-devel) [[alternative HTML version deleted]] _______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
