----- Original Message ----- > From: "Elena Grassi" <grass...@gmail.com> > To: bioc-devel@r-project.org > Sent: Thursday, January 8, 2015 5:11:50 AM > Subject: Re: [Bioc-devel] Announcing Docker containers for Bioconductor > > Thanks, this is really useful and I was looking forward to it after > having used rocker! > > I have a strange (ok, at least to me :) ) issue concerning volumes. > On a machine (debian testing/unstable up to date) everything works > smoothly when I do something like: > data@decoder:~$ docker run -v > /home/data/Dropbox/work/ > matrix/mr_bioc/matrix_rider/:/opt/matrix_rider > -p 8787:8787 9f40f8036ad4 > (in /home/data/Dropbox/work/matrix/mr_bioc/matrix_rider/ I have a > Rstudio project)
What image is 9f40f8036ad4? Why are you not using the user/repository name for the image? Is it a rocker image or a Bioconductor image? > > The same command on another machine (more or less the same debian as > before) leads me to being unable to open the project with Rstudio as > long as the directory is not writeable. > The only relevant difference seems to be my user UID which is 1000 on > the first machine but different on the other one. I tried to use -e > as > suggested here > https://github.com/rocker-org/rocker/wiki/Sharing-files-with-host-machine > with no luck. > > Does anyone more docker-savy than me have a suggestion? (maybe the > volumes approach is not the best one here). Note that Rstudio Server runs as a user called rstudio, not necessarily a privileged user. So the directory you are trying to mount should probably be writable (and readable) by all. so try chmod -R a+rw /home/data/Dropbox/work/matrix/mr_bioc/matrix_rider/ Dan > > Thanks, > E. > p.s. sorry Dan for the first mail sent only to you > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
