----- Original Message ----- > From: "Vincent Carey" <st...@channing.harvard.edu> > To: "Eric Frichot" <eric.fric...@gmail.com> > Cc: bioc-devel@r-project.org > Sent: Sunday, March 22, 2015 11:42:52 AM > Subject: Re: [Bioc-devel] development vs release version > > On Sun, Mar 22, 2015 at 2:27 PM, Eric Frichot > <eric.fric...@gmail.com> > wrote: > > > Ok. Thanks for your help. It worked with the r-devel > > > > I assume that my package will be available with the current version > > of R > > after the next bioconductor release ? > > > > > The next Bioconductor release will follow on the transition of > R-release/R-patched to > the 3.2.x series. > > > > If I add a new version for my package, after the release, people > > will also > > have to install the r-devel to access this new version ? > > > > > The current R-devel, 3.2.x, will be the released version in a couple > of > weeks.
Actually, R-devel is currently version 3.3.0. You should not use this version, instead you should use what's currently R-alpha (3.2.0). > That is > what folks will have to use to get your package in the release > version. > Those using > R-devel later on can get the devel version of your package as it > evolves. > > Some relevant concepts are at > > http://master.bioconductor.org/developers/how-to/version-numbering/ > > but ... there is likely a more transparent discussion of the > release/devel > distinctions > somewhere that I am not finding currently. If questions remain > please let > us know. > It's discussed a bit at http://bioconductor.org/developers/how-to/source-control/ under "where to commit. See also http://bioconductor.org/developers/package-submission/#acceptance . Dan > > > Thanks, > > > > Eric Frichot > > > > > > On Sun, Mar 22, 2015 at 7:01 PM Vincent Carey > > <st...@channing.harvard.edu> > > wrote: > > > >> The message means that you should use R-devel to get your package. > >> R 3.1.3 is currently regarded as R-patched. > >> > >> On Sun, Mar 22, 2015 at 1:44 PM, Eric Frichot > >> <eric.fric...@gmail.com> > >> wrote: > >> > >>> Hi everyone, > >>> > >>> I am new in the bioconductor community. I just finished the > >>> bioconductor > >>> review of my package called LEA. By the way, all your feedbacks > >>> are more > >>> than welcome about it. > >>> > >>> I am not sure to understand how the release of a new version > >>> works in > >>> bioconductor. I have few questions you may help me with. > >>> > >>> I just downloaded my package through bioconductor. So, it is > >>> under > >>> development. I tried to install my package using biocLite > >>> function. I got > >>> the error message > >>> > >>> package ‘LEA’ is not available (for R version 3.1.3) > >>> > >>> Does it mean that I have to wait the next bioconductor release ? > >>> > >>> If it is the case, imagine that I add new features for my > >>> package, do I > >>> have to wait the next release (every 6 month) for these features > >>> to be > >>> available ? > >>> > >>> Thanks a lot for your help, > >>> > >>> Eric Frichot > >>> > >>> [[alternative HTML version deleted]] > >>> > >>> _______________________________________________ > >>> Bioc-devel@r-project.org mailing list > >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel > >>> > >> > >> > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel