Robert, you just need to put MafDb.ExAC.r0.3.sites in Depends, Suggests, or Imports.
Dan ----- Original Message ----- > From: "Robert Castelo" <robert.cast...@upf.edu> > To: bioc-devel@r-project.org > Sent: Friday, April 10, 2015 2:33:04 PM > Subject: [Bioc-devel] MafDb.ExAC.r0.3.sites missing from build > > hi, > > i have just noticed that VariantFiltering breaks in the last build: > > http://www.bioconductor.org/checkResults/3.1/bioc-LATEST/VariantFiltering/zin2-buildsrc.html > > and the reason is that the devel annotation package > > http://www.bioconductor.org/packages/devel/data/annotation/html/MafDb.ExAC.r0.3.sites.html > > seems not to be available on the build system during the vignette > execution. > > it's strange b/c its landing page shows that the package is there and > other MafDb annotation packages are loaded by VariantFiltering during > the vignette execution without problems. > > just to ensure that this is solved for the release/NEWS deadline let > me > know if you think this is something that can be fixed on the build > machine or you prefer that i update VariantFiltering so that it does > not > attempt to load this package during the vignette execution, and we > sort > out the problem after the release. > > thanks!! > > robert. > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel