Hi Ulrich, ----- Original Message ----- > From: "Ulrich Bodenhofer" <bodenho...@bioinf.jku.at> > To: bioc-devel@r-project.org > Cc: "Hervé Pagès" <hpa...@fhcrc.org>, m...@bioinf.jku.at, "Johannes Palme" > <jpa...@aon.at> > Sent: Monday, April 13, 2015 3:37:37 AM > Subject: [Bioc-devel] OpenMP on Mac OS "Mavericks" build server morelia > > Dear BioC Core Team members, > > As you know, we have submitted a package 'msa' for Bioconductor 3.1 > which has been accepted last week. After having fixed some other > cross-platform problems, we are still having issues on the Mavericks > build server morelia (see > http://bioconductor.org/checkResults/3.1/bioc-LATEST/msa/morelia-buildsrc.html). > Version 0.99.4 of our package throws an error that the OpenMP include > file omp.h is not found. Our configure script actually checks for > OpenMP > and our package builds without any errors on all Mac OS systems we > have > tested so far (Yosemite and Mavericks, and it also works on the Snow > Leopard build server petty). I suppose there are two possible sources > of
How did you set up OpenMP on your Mavericks machine? Dan > the problem: that something is still wrong with our code or that > OpenMP > is ill-configured on morelia. In the meantime, we have checked in > Version 0.99.5 which explicitly turns off OpenMP for all Mac OS > platforms, but we would prefer to remove this suboptimal workaround > if > possible. Any help is gratefully appreciated! > > Thanks in advance and best regards, > Ulrich > > P.S.: If this is a question that should not be discussed on this > list, > but elsewhere, please let us know. > P.P.S.: That the Makefile says "Compilation successful" despite the > compilation error, has been fixed in 0.99.5. > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel