----- Original Message ----- > From: "Wolfgang Huber" <whu...@embl.de> > To: bioc-devel@r-project.org > Sent: Thursday, June 18, 2015 5:47:27 AM > Subject: [Bioc-devel] Rendering of vignette R code on the website > > Perhaps a buglet in the build system / the website code? -- > > When I follow the link to “R Script” on the page > http://www.bioconductor.org/packages/devel/bioc/html/DESeq2.html > (i.e. > http://www.bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.R > ) the result is a nearly empty file. > > With other packages, e.g. BiocStyle, this does not happen, and code > is shown: > http://bioconductor.org/packages/devel/bioc/vignettes/BiocStyle/inst/doc/LatexStyle.R >
I tracked this down and fixed it, results should be evident in the next build results (tomorrow late morning Seattle time). > I am also confused about the first lines of both of these files: > ### R code from vignette source > 'vignettes/DESeq2/inst/doc/DESeq2.Rnw' > ### R code from vignette source > 'vignettes/BiocStyle/inst/doc/LatexStyle.Rnw' > as the stated paths do (should) not exist. > They do exist on the machine where the Stangle/purl takes place, though I agree it's a bit confusing. I will think about how to handle this. Thanks for the report, Dan > Thanks and best wishes > Wolfgang > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
