When I roll that styles.css into the bioconductor.css file shipping with BiocStyle, it gets rid of the bullets.
Its added to BiocStyle 1.7.5 Kasper On Wed, Jul 29, 2015 at 9:37 PM, Kasper Daniel Hansen < kasperdanielhan...@gmail.com> wrote: > This is just reporting what I see using Bioc-devel: > > I get a TOC where each line looks like > > <BULLET> <SECTION_NUMBER_AS_LINK> <SECTION_TITLE_AS_LINK> > > While I agree that the bullet is kind of ugly (and would be great to get > rid of), I do get the section numbering functionality you want. > > Note: for this report I am rendering the Rmd file myself, I haven't tested > how it looks when I do it as a vignette. > > It would be great to expand on the BiocStyle vignette and discuss > citations and other issues and also include a clear template file. I am > planning on doing some pull request along those lines soon; I have been > testing Rmd -> HTML extensively for a course I am developing, but I am also > new to the knitr+markdown thing so I am still experimenting. > > Kasper > > > On Wed, Jul 29, 2015 at 4:44 PM, Thomas Girke <thomas.gi...@ucr.edu> > wrote: > >> A simple formatting issue: >> >> Since support for table of contents in R markdown vignettes has become >> available, it seems like an amazing solution for many online >> documentation needs in the future. >> >> What would help me to fully to adopt to it, is a solution to get rid of >> the bullets in a numbered table of content which looks a bit unusual to >> me: >> >> http://www.bioconductor.org/packages/release/bioc/vignettes/BiocStyle/inst/doc/HtmlStyle.html >> For navigating longer documents numbered tables of contents are an >> essential feature to me, which I believe wasn't available in earlier R >> markdown versions or sometimes they showed up in unacceptable places >> like before the title of a document. >> >> A prescribed solution to get rid of these bullets from here >> >> http://stackoverflow.com/questions/28138456/rmarkdown-with-knitr-to-html-how-to-hide-bullets-in-toc-table-of-contents >> didn't work for me. >> >> Also, it would be nice to be able to generate the exact same vignette >> style in Bioc release and development, but it seems others have >> difficulties with this too, probably due to version differences of R >> markdown as seen here: >> >> http://www.bioconductor.org/packages/devel/bioc/vignettes/BiocStyle/inst/doc/HtmlStyle.html >> >> Thanks for making BiocStyle and R markdown available. I really enjoy >> using them. The resulting HTML pages look professionally designed and >> are highly functional while allowing us to focus on generating content >> in a consistent format rather than getting lost in formatting issues. >> >> Thomas >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
