Hi Peter,
Starting with S4Vectors 0.7.12, labeledLine() belongs to S4Vectors so
using the triple colon should not be necessary (and doing so will
actually trigger a note from R CMD check). Can you provide more
details on why you need this?
Thanks,
H.
On 08/09/2015 09:16 PM, Peter Hickey wrote:
Hi Hervé,
I was having trouble with some devel code of mine and tracked it down to some
recent updates moving the internal utility labeledLine() from BiocGenerics to
S4Vectors. The labeledLine() internal function wasn’t being found when called
in certain circumstances. Here’s an svn diff to fix the bug in the S4Vectors
package.
Cheers,
Pete
Index: DESCRIPTION
===================================================================
--- DESCRIPTION (revision 107278)
+++ DESCRIPTION (working copy)
@@ -8,7 +8,7 @@
interest (e.g. DataFrame, Rle, and Hits) are implemented in the
S4Vectors package itself (many more are implemented in the IRanges
package and in other Bioconductor infrastructure packages).
-Version: 0.7.12
+Version: 0.7.13
Author: H. Pages, M. Lawrence and P. Aboyoun
Maintainer: Bioconductor Package Maintainer <maintai...@bioconductor.org>
biocViews: Infrastructure, DataRepresentation
Index: R/List-class.R
===================================================================
--- R/List-class.R (revision 107278)
+++ R/List-class.R (working copy)
@@ -86,7 +86,7 @@
cat(classNameForDisplay(object), " of length ", lo,
"\n", sep = "")
if (!is.null(names(object)))
- cat(labeledLine("names", names(object)))
+ cat(S4Vectors:::labeledLine("names", names(object)))
})
--------------------------------
Peter Hickey,
PhD Student/Research Assistant,
Bioinformatics Division,
Walter and Eliza Hall Institute of Medical Research,
1G Royal Parade, Parkville, Vic 3052, Australia.
Ph: +613 9345 2324
hic...@wehi.edu.au
http://www.wehi.edu.au
______________________________________________________________________
The information in this email is confidential and inte...{{dropped:19}}
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
