Hi Charles,
What compiler do you use? Please show the entire output of
biocLite("S4Vectors") plus your sessionInfo(). Thanks!
H.
On 08/27/2015 06:19 AM, Charles Determan wrote:
I am trying to run the basic install with biocLite. I am running R 3.2.2
on Ubuntu 14.04.
I install the BiocInstaller package with
source("http://bioconductor.org/biocLite.R";)
I then try again to just install S4Vectors but it errors out on the
src_utils file with the following error:
str_utils.c: In function ‘get_svn_time’:
str_utils.c:259:2: warning: implicit declaration of function ‘tzset’
[-Wimplicit-function-declaration]
tzset();
^
str_utils.c:261:18: error: ‘timezone’ undeclared (first use in this
function)
utc_offset = - (timezone / 3600);
^
str_utils.c:261:18: note: each undeclared identifier is reported only once
for each function it appears in
make: *** [str_utils.o] Error 1
ERROR: compilation failed for package ‘S4Vectors’
Did I miss something?
Thanks,
Charles
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Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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