Hi Weijun, ----- Original Message ----- > From: "Luo Weijun" <[email protected]> > To: [email protected], [email protected] > Cc: "Martin Morgan" <[email protected]>, [email protected] > Sent: Wednesday, September 23, 2015 9:44:13 AM > Subject: KEGG REST issue > > Dear BioC team, > I noticed some problem with keggLink() function of KEGGREST package, > and it can be traced back to KEGG REST API Linked entries. Some of > this API function is broken. For example, the following line used to > get all gene-pathway mapping for human, but retrieves nothing now. > path.hsa= KEGGREST::keggLink("pathway", "hsa") > > In fact, these two bulk queries with the rest api don’t work anymore. > http://rest.kegg.jp/link/pathway/hsa > http://rest.kegg.jp/link/hsa/pathway > but smaller queries on Linked entries seem to be fine. not sure > whether other REST API functions are affected or not. As a > consequence, KEGGREST and many dependent packages had build error. > http://bioconductor.org/checkResults/release/bioc-LATEST/KEGGREST/morelia-buildsrc.html > > anway, just want you know about this, see if you can do anything on > this.
Yes, I am aware of this. It's an issue on the KEGG side and I have contacted the KEGG team. I have not heard back yet. Dan > Weijun > > _______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
